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soap bioActor

Description

Fast DNA alignment by soap program.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly

Inputs

querySequenceFileDNA sequence file in FASTA format.
referencePrefixThe prefix of formatted reference database.

Outputs

alignmentFileAlignment output file.

Parameters

programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run soap
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).