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tophat bioActor
Description
Alignment of RNA-seq reads to reference database with annotations.Inputs
| dnaSequenceFile | DNA sequence file in FASTA format. |
| refGtfFile | Reference annotation file in GTF format. |
| referencePrefix | The prefix of formatted reference database. |
Outputs
| bamFile | no description |
Parameters
| outputDir | The directory containing all output files. |
| program | The command line program to execute. |
| checkOutputTimestamp | If true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error. |
| additionalOptions | Additional command line options to run tophat |
| Choice | The execution choice to run. |