Workflow Demos

Return to all workflow demos

orf_finder bioActor

Description

Orf prediction by orf_finder prograrm.

Inputs

dnaSequenceFileDNA sequence file in FASTA format.

Outputs

orfSequenceFilePredicted orf sequences in FASTA format.

Parameters

minOrfLenMinimum orf length, default 20.
minOrfLenBetweenMinimum orf length between stop codons, default 40.
translationTableTranslation table, default 1.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run orf_finder
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).