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DynamicTrim.pl bioActor

Description

Trimming low quality tail from illumina DNA reads file.

Inputs

dnaFastqFileDNA file in FASTQ format.

Outputs

trimmedFileTrimmed DNA file in FASTQ format.

Parameters

phredCutoffPhred score cutoff(0-40). A value below this is filtered.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run DynamicTrim.pl
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).