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kegg_parse.pl bioActor
Description
Downstream analysis of alignment against KEGG database.Inputs
| alignmentDir | An directory containing all alignment output files. |
Outputs
| longTable | Long table of KEGG hits. |
| shortTable | Short table of KEGG hits. |
| statisticsTable | Table of statistics of KEGG hits. |
Parameters
| outputDir | The prefix of the three output files. |
| program | The command line program to execute. |
| checkOutputTimestamp | If true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error. |
| additionalOptions | "-s coord:mask:seq": generate rRNA table, maksed input and rRNA files. |
| Choice | The execution choice to run. |