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ssake bioActor

Description

Assembly of DNA reads by SSAKE program.

Inputs

dnaSequenceFileDNA sequence File in FASTA format.

Outputs

contigFileContig file.

Parameters

pair0 if single-end reads; 1 if pair-ended reads.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run ssake
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).