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cuffdiff bioActor

Description

Differential analysis of two groups.

Inputs

rerferenceGtfFileReference annotation file in GTF format.
group1Bam files of group 1.
group2Bam files of group 2.

Outputs

isoformExpressionDiffFileIsoform expression differential analysis results.
geneExpressioDiffnFileGene expression differential analysis results.

Parameters

programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsA parameter containing additional command line options.
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).