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RNA_parse.pl bioActor
Description
Downstream analysis of alignment against tRNA database.Inputs
| alignmentDir | An directory containing all alignment output files. |
Outputs
| maskedInputFile | Input sequence file with masked tRNA. |
| tRNATable | Table showing the positions of tRNA. |
| tRNAFile | rRNA sequences file. |
Parameters
| outputPrefix | The prefix of the three output files. |
| outputSuffix | "coord:mask:seq": generate tRNA table, maksed input and tRNA files. |
| program | The command line program to execute. |
| checkOutputTimestamp | If true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error. |
| additionalOptions | Additional command line options to run RNA_parse.pl |
| Choice | The execution choice to run. |