An directory containing all alignment output files.
referenceName
hmmer formatted databases like PFAM/TIGRFAM.
Outputs
goMappingTable
GO mapping count table.
ecMappingTable
EC mapping count table.
famHitTable
PFAM/TIGRFAM hit count table.
Parameters
outputPrefix
The prefix of four output files.
program
The command line program to execute.
checkOutputTimestamp
If true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
