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qc_filter_fastq.pl bioActor

Description

Filtering out low quality 454 reads.

Inputs

dnaFastqFileDNA file in FASTQ format.

Outputs

summaryFileSummary file for filtering.
filteredFastaFileFIltered DNA file in FASTA format.

Parameters

programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptions"$outputDir 21 65": writing to $outputDir directory with quality score cutoff 21 and minimum length 65.
ChoiceThe execution choice to run.