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bwa index bioActor

Description

Formatting reference database by bwa program.

Inputs

referenceSequencetFileReference sequence file in FASTA format.

Outputs

referencePrefixThe prefix of formatted reference database.

Parameters

programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptions"index -a is": formating database using IS linear-time algorithm.
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).