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fraggene_scan.pl bioActor

Description

Orf prediction by fraggene_scan prograrm.

Inputs

dnaSequenceFileDNA sequence file in FASTA format.

Outputs

outputPrefixThe prefix of output files.

Parameters

complete0 if the input data are short sequence reads; 1 if they are complete genome sequences.
trainFile name contaiing model parameters. For example, "illumina_5" is a model for illumina data with 0.5% error rate.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run fraggene_scan.pl
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).