Workflow Demos

Return to all workflow demos

hmm_rRNA.pl bioActor

Description

Alignment of query against rRNA database using hmmer program.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly

Inputs

queryDirAn directory containing all dna sequence files as query.

Outputs

alignmentDirAn directory containing all alignment output files.

Parameters

cleanupCmdClean up all files in alignment directory before running.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run hmm_rRNA.pl
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).