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clustalw bioActor

Description

Multiple sequence alignment from sequence file by clustalw software.

Inputs

sequenceFileSequence file.

Outputs

alignFileAlignment file.

Parameters

outputFormat"-OUTPUTTREE=phylip": alignment file in phylip format.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run clustalw
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).