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tRNAscan-SE.pl bioActor

Description

tRNA prediction by tRNAscan-SE program.

Execution Choices

  • HadoopMapOnly
  • LocalExecution
  • StratosphereMapOnly

Inputs

queryDirAn directory containing all dna sequence files as query.

Outputs

alignmentDirAn directory containing all alignment output files.

Parameters

cleanupCmdClean up all files in alignment directory before running.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run tRNAscan-SE.pl
ChoiceThe execution choice to run.