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SOAPdenovo31mer bioActor

Description

The first step of soapdenovo assembly program.

Inputs

configFileConfiguration file.

Outputs

outputPrefixThe prefix of output files.

Parameters

threadThe number of thread(s) used for computation.
kmerkmer size.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptions"pregraph ": create pregraph.
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).