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rpsblast_parse.pl bioActor

Description

Downstream analysis of rpsblast alignment.

Inputs

alignmentDirAn directory containing all alignment files.
referenceNamerpsblast formatted databases like COG/KOG/PRK.

Outputs

longTableDetailed table of database hits.
familyCountTableFamily hit count table.
shortTableBrief table of database hits.
classCountTableClass hit count table.

Parameters

outputPrefixThe prefix of four output files.
programThe command line program to execute.
checkOutputTimestampIf true, verify the last modification timestamp for each output file has increased after execution. If the timestamp has not increased, throw an error.
additionalOptionsAdditional command line options to run rpsblast_parse.pl
ChoiceThe execution choice to run.

bioKepler is funded by NSF DBI-1062565 under CI Reuse and Advances in Bioinformatics programs. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).